Lab Publications
]
(1998). Adapting a feedforward heteroassociative network to Hodgkin-Huxley dynamics.
J. Computational Neuroscience. 5, 353-364.
(2001). Alternating dominance of NMDA and AMPA for learning and recall: a computer model.
Neuroreport. 12, 2503-2507.
(2019). Amyloid pathology–produced unexpected modifications of calcium homeostasis in hippocampal subicular dendrites.
Alzheimers. Dement..
(2010). Attention-like modulation of hippocampus place cell discharge.
J Neurosci. 30, 4613-4625.
(2008). Broadening of activity with flow across neural structures.
Perception. 37, 401-407.
(1999). Burst Firing in Identified Interneurons of the Rat Lateral Geniculate Nucleus.
Neuroscience. 91, 1445-1460.
(2016). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.
Neurosci. 316, 344-366.
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
BMC Neuroscience. 15, P108.
(1999). Can the hippocampus tell time?: The temporo-septal engram shift model.
Neuroreport. 10, 2301-2306.
(2008). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting. 3, 284.
(2014). Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity.
Front Neural Circuits. 8, 16.
(2008). Computational Intelligence in Electrophysiology.
Studies in Computational Intelligence. 122, 325-359.
(1998). Computer model of antiepileptic effects mediated by alterations in \gabaa\-mediated inhibition.
Neuroreport. 9, 691-696.
(1997). A computer model of clonazepam's effect in a thalamic slice model of absence epilepsy.
Neuroreport. 8, 3339-3343.
(1992). Computer model of ethosuximide's effect on a thalamic neuron.
32, 131-139.
(2003). Computer model of passive signal integration based on whole-cell ınvit\ studies of rat lateral geniculate nucleus.
European Journal of Neuroscience. 17, 1531-1541.
(2017). Computer modeling for pharmacological treatments for dystonia.
Drug Discov Today: Dis Model. In Press.
(2017). Computer modeling of epilepsy: opportunities for drug discovery.
Drug Discov Today: Dis Model. In press.
(2015). Computer modeling of ischemic stroke.
Scholarpedia. 10, 32015; revision \#148671; Accessed Oct 12, 2015.
(2017). Computer modeling of ischemic stroke.
Drug Discov Today: Dis Model. 30, In press.
(2008). Computer modelling of epilepsy.
Nat Rev Neurosci. 9, 626-637.
(1998). Computer Models of Hippocampal Circuit Changes of the Kindling Model of Epilepsy.
Artificial Intelligence in Medicine. 13, 81-98.
(1999). Computer models of stroke recovery: Implications for neurorehabilitation.
The Neuroscientist. 5, 100-111.
(1996). Computer network model of mossy fiber sprouting in dentate gyrus.
Epilepsia – AES Proceedings. 37 S. 5, 117.
(2005). Computer simulation of epilepsy: implications for seizure spread and behavioral dysfunction.
Epilepsy & Behavior. 7, 336-344.
(1992). Computer simulations of EPSP-to-spike (E-S) potentiation in hippocampal CA1 pyramidal cells.
12, 607-618.
(2017). Computers, causality and cure in epilepsy.
Brain. 140, 516-519.
(1996). Control of slow oscillations in the thalamocortical neuron: A computer model.
Neuroscience. 70, 673-684.
(2013). Cortical information flow in Parkinson's disease: a composite network/field model.
Front Comput Neurosci. 7, 39.
(2013). Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex.
PLoS One. 8, e57453.
(2015). Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm.
Frontiers in Neurorobotics. 9,
(2018). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2008). Data mining of time-domain features from neural extracellular field data.
Studies in Computational Intelligence. 151, 119-140.
(2007). Data mining through simulation.
Methods Mol Biol. 401, 155-166.
(1989). Direct dyslexia: Preserved oral reading of real words in Wernicke's aphasia.
Brain. 112, 583-594.
(1997). Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures.
jnphys. 77, 1679-1696.
(2013). Dynamical microstates in primary auditory cortex.
Society for Neuroscience Abstracts. 43,
(2012). Dynamically repairing and replacing neural networks: using hybrid computational and biological tools.
{IEEE} Pulse. 3, 57-59.
(2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.
IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
(2014). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease.
Front Comput Neurosci. 8, 39.
(2018). Embedded ensemble encoding hypothesis: The role of the ``Prepared'' cell.
J. Neurosci. Res..
(2011). Emergence of physiological oscillation frequencies in a computer model of neocortex.
Front Comput Neurosci. 5, 19.
(2017). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.
IBM Journal of Research and Development. 61, 6–1.
(1997). \gabaa-mediated IPSCs in piriform cortex have fast and slow components with different properties and locations on pyramidal cells: Study with physiological and modeling methods.
jnphys. 78, 2531-2545.
(2018). Geppetto: a reusable modular open platform for exploring neuroscience data and models.
Phil. Trans. R. Soc. B. 373, 20170380.
(2016). Global dynamics of selective attention and its lapses in primary auditory cortex.
Nat Neurosci. In press.
(2004). Hybrid neural networks - combining abstract and realistic neural units.
IEEE Engineering in Medicine and Biology Society Proceedings. 6, 3996-3998.
(2013). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.
PLoS One. 8, e76285.
(2015). Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3.
Hippocampus. in press.
(2000). Independent dendritic domains in the thalamic circuit.
Neurocomputing. 32, 299–305.
(2005). Independent variable timestep integration of individual neurons for network simulations.
17, 903-921.
(2014). Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment.
Neural Control of Movement (NCM) meeting.
(1997). Inhibition Can Disrupt Hypersynchrony In Model Neuronal Networks.
Progress in neuro-psychopharmacology & biological psychiatry.
(2012). Input-to-output transformation in a model of the rat hippocampal CA1 network.
Front Comput Neurosci. 6, 57.
(2010). Interictal EEG Discoordination in a Rat Seizure Model.
J Clin Neurophysiol. 27, 438–444.
(1999). An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus.
jnphys. 81, 702-711.
(2008). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(2011). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus.
J Neurosci. 31, 11733-11743.
(2017). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2008). Local axon collaterals of area ca1 support spread of epileptiform discharges within CA1, but propagation is unidirectional.
Hippocampus. 18, 1021-1033.
(1989). Localization of a leech inhibitory synapse by photo-ablation of individual dendrites.
504, 43-48.
(2017). Measurement of peripheral vision reaction time identifies white matter disruption in patients with mild traumatic brain injury.
J Neurotrauma.
(2011). Measuring the quality of neuronal identification in ensemble recordings.
jnsci. 31, 16398–16409.
(2014). Modeling molecular pathways of neuronal ischemia.
Prog Mol Biol Transl Sci. 123, 249–275.
(2018). Modeling pathogenesis and treatment response in childhood absence epilepsy.
Epilepsia. 59, 135–145.
(1999). Modeling thalamocortical oscillations.
(Ulinski, P., Jones EG., & Peters A., Ed.).Cerebral Cortex. 13, 479-509.
(2014). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
BMC Neuroscience. 15, P106.
(2014). Motor cortex microcircuit simulation based on brain activity mapping.
Neural Comput. 26, 1239–1262.
(2013). Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks.
International Journal of Neural Systems. 23, 1350021.
(2014). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(2017). Multiscale modeling in the clinic: diseases of the brain and nervous system.
Brain Inform. 4, 219-230.
(2016). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2017). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.