Lab Publications
Found 85 results
Author Title [ Type] Year Filters: First Letter Of Last Name is H [Clear All Filters]
Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(2008). Building, simulating, and visualizing reaction-diffusion models with NEURON's enhanced rxd module.
Society for Neuroscience 2018 (SFN '18).
(2018). Calcium 'impedance mismatch' – the role of geometry on diffusion dynamics.
Society for Neuroscience 2014 (SFN '14).
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: A multiscale model of prefrontal cortex.
Society for Neuroscience 2014 (SFN '14).
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Calcium wave propagation varies with changes in endoplasmic reticulum parameters: A computer model.
Society for Neuroscience 2013 (SFN '13).
(2013). Calcium-electrical interactions: An example of reaction-diffusion in the neuron simulator.
Society for Neuroscience 2012 (SFN '12).
(2012). Computer model of endocannabinoid effects in CA3.
Society for Neuroscience 2015 (SFN '15).
(2015). Efficient in silico 3D intracellular neuron simulation.
Society for Neuroscience 2019 (SFN '19).
(2019). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies.
Society for Neuroscience 2018 (SFN '18).
(2018). Emergent oscillations in neocortex: a simulation study.
Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.
(2010). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2016). Extracellular reaction–diffusion in the NEURON simulator: modeling ischemic stroke.
Computational Neuroscience Meeting (CNS 18').
(2018). Homeostasis and spreading depolarization in multiscale simulation of ischemic stroke..
Society for Neuroscience 2018 (SFN '19).
(2019). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2015). Ih modulates theta rhythm and synchrony in computer model of CA3.
Computational Neuroscience Meeting (CNS 12').
(2012). Integrating Systems Biology Markup Language (SBML) with NEURON.
Computational Neuroscience.
(2014). Integrating Systems Biology Markup Language (SBML) with NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Interfaces in multiscale reaction-diffusion models in the NEURON simulator.
Society for Neuroscience 2013 (SFN '13).
(2013). Interictal EEG discoordination in a rat seizure model.
Statistical Analysis of Neuronal Data.
(2010). Just-in-time connectivity for very large neuronal networks.
Computational Neuroscience Meeting (CNS 07').
(2007). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2014). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(2017). Modeling network effects of dendritic plateau potentials in cortical pyramidal neurons.
Society for Neuroscience 2019 (SFN '19).
(2019). Mosaic multiscale computer modeling of ischemic stroke.
Society for Neuroscience 2016 (SFN '16).
(2016). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2018). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON.
Society for Neuroscience 2018 (SFN '18).
(2018). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2018). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex.
Society for Neuroscience 2015 (SFN '15).
(2015). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Parallelizing large networks using NEURON-Python.
BMC Neuroscience.
(2015). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Stochastic diffusion simulation in NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 25th Annual Computational Neuroscience Meeting: CNS-2016.
BMC Neuroscience. 17, 54.
(2016). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). Computational Neuroscience (CNS*2007).
BMC Neuroscience. 8, I1.
(2007). Computational Neuroscience (CNS*2008).
BMC Neuroscience. 9, I1.
(2008). Alternating dominance of NMDA and AMPA for learning and recall: a computer model.
Neuroreport. 12, 2503-2507.
(2001). Amyloid pathology–produced unexpected modifications of calcium homeostasis in hippocampal subicular dendrites.
Alzheimers. Dement..
(2019). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.
Neurosci. 316, 344-366.
(2016). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
BMC Neuroscience. 15, P108.
(2014). Computer Models of Hippocampal Circuit Changes of the Kindling Model of Epilepsy.
Artificial Intelligence in Medicine. 13, 81-98.
(1998). Computer network model of mossy fiber sprouting in dentate gyrus.
Epilepsia – AES Proceedings. 37 S. 5, 117.
(1996). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2018). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2018). Embedded ensemble encoding hypothesis: The role of the ``Prepared'' cell.
J. Neurosci. Res..
(2018). Hybrid neural networks - combining abstract and realistic neural units.
IEEE Engineering in Medicine and Biology Society Proceedings. 6, 3996-3998.
(2004). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.
PLoS One. 8, e76285.
(2013). Independent variable timestep integration of individual neurons for network simulations.
17, 903-921.
(2005). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(2008). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2017). Measurement of peripheral vision reaction time identifies white matter disruption in patients with mild traumatic brain injury.
J Neurotrauma.
(2017). Modeling pathogenesis and treatment response in childhood absence epilepsy.
Epilepsia. 59, 135–145.
(2018). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). NetPyNE, a tool for data-driven multiscale modeling of brain circuits.
eLife. 8, e44494.
(2019).