Lab Publications
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Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.
IEEE/ACM Trans. Comput. Biol. Bioinform.. 16, 1007–1019.
(2019). Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.
IEEE/ACM Trans. Comput. Biol. Bioinform.. 16, 1007–1019.
(2019). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2017). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2006). Oscillations in Thalamic Interneurons.
snabs. 21, 12.5.
(1995). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1996). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2017). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015).
(2018). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex.
Society for Neuroscience 2015 (SFN '15).
(2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2015). Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Neural query system: data-mining from within the NEURON simulator.
Neuroinformatics. 4, 163-176.
(2006). Neural discoordination of hippocampus and prefrontal cortex spike trains in a phencyclidine schizophrenia-related animal model.
Society for Neuroscience 2009 (SFN '09).
(2009). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
BMC Neuroscience. 15, P107.
(2014). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). NetPyNE, a tool for data-driven multiscale modeling of brain circuits.
eLife. 8, e44494.
(2019). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience Meeting (CNS 16').
(2016). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience.
(2016). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2018). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON.
Society for Neuroscience 2018 (SFN '18).
(2018). Neocortical simulation for epilepsy surgery guidance: localization and intervention.
(Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.
(2014). Muscarinic receptor mediated responses in thalamic local interneurons.
snabs. 22, 574.8.
(1996). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2016). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2016). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale modeling of multitarget pharmacotherapy for dystonia.
Computational Neuroscience Meeting (CNS 16').
(2016). Multiscale modeling of multitarget pharmacotherapy for dystonia.
Computational Neuroscience Meeting (CNS 16').
(2016). Multiscale modeling of cortical information flow in Parkinson's disease.
Computational Neuroscience Meeting (CNS '13).
(2013). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale modeling in the clinic: diseases of the brain and nervous system.
Brain Inform. 4, 219-230.
(2017). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(2014). Multiscale computer modeling of penumbral zones in brain ischemia.
Society for Neuroscience 2017 (SFN '17).
(2017).
(2015). Motor cortex neurons: from experiment to model via evolutionary algorithms.
Computational Neuroscience.
(2015). Motor cortex microcircuit simulation based on brain activity mapping.
Neural Comput. 26, 1239–1262.
(2014). Mosaic multiscale computer modeling of ischemic stroke.
Society for Neuroscience 2016 (SFN '16).
(2016). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
Computational Neuroscience Meeting (CNS '14). 15, P106.
(2014). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
Computational Neuroscience Meeting (CNS '14). 15, P106.
(2014). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
BMC Neuroscience. 15, P106.
(2014). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
BMC Neuroscience. 15, P106.
(2014). Modulation of stimulus fields in a computer model of the thalamocortical system.
Society for Neuroscience.
(2011). Modeling thalamocortical oscillations.
(Ulinski, P., Jones EG., & Peters A., Ed.).Cerebral Cortex. 13, 479-509.
(1999). Modeling pathogenesis and treatment response in childhood absence epilepsy.
Epilepsia. 59, 135–145.
(2018). Modeling network effects of dendritic plateau potentials in cortical pyramidal neurons.
Society for Neuroscience 2019 (SFN '19).
(2019). Modeling molecular pathways of neuronal ischemia.
Prog Mol Biol Transl Sci. 123, 249–275.
(2014). Modeling molecular pathways of neuronal ischemia.
Prog Mol Biol Transl Sci. 123, 249–275.
(2014). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(2017). Microconnectomics of primary motor cortex: a multiscale computer model.
Multiscale Modeling. National Institutes of Health.
(2015). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2014). Measuring the quality of neuronal identification in ensemble recordings.
jnsci. 31, 16398–16409.
(2011).
(2017). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits.
Society for Neuroscience 2017 (SFN '17).
(2017).
(2018).
(1989). Local axon collaterals of area ca1 support spread of epileptiform discharges within CA1, but propagation is unidirectional.
Hippocampus. 18, 1021-1033.
(2008). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2017). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2017). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control.
24th Annual Computational Neuroscience Meeting (CNS15).
(2015). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus.
J Neurosci. 31, 11733-11743.
(2011). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus.
J Neurosci. 31, 11733-11743.
(2011). Just-in-time connectivity for very large neuronal networks.
Computational Neuroscience Meeting (CNS 07').
(2007). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(2008).