Lab Publications
Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2012). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2013). Water-tight membranes from neuronal morphology files.
J Neurosci Methods. 220, 167–178.
(2013). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
BMC Neuroscience. 15, P108.
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Integrating Systems Biology Markup Language (SBML) with NEURON.
Computational Neuroscience.
(2014). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2014). Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2015). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.
Neurosci. 316, 344-366.
(2016). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2016). Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON.
Neural Comput. 28, 2063-2090.
(2016). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2017). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2017). Using NEURON for reaction-diffusion modeling of extracellular dynamics.
Frontiers in Neuroinformatics.
(2018).