Lab Publications
]
(2013). Dynamical microstates in primary auditory cortex.
Society for Neuroscience 2013 (SFN '13).
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: A multiscale model of prefrontal cortex.
Society for Neuroscience 2014 (SFN '14).
(2011). Simulating the spread of activation in neocortical circuits. Computational Neuroscience.
Computational Neuroscience.
(2013). Brain Ischemia and Stroke.
(Jaeger, D., & Jang R., Ed.).Encyclopedia of Computational Neuroscience.
(2011). Measuring the quality of neuronal identification in ensemble recordings.
jnsci. 31, 16398–16409.
(2015). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2008). Standardized assessment of extracellular single unit isolation quality.
socns. 690, 12.
(2008). Virtual slice simulation of resonance in a layered cortical model.
Society for Neuroscience.
(2016). Multiscale modeling of multitarget pharmacotherapy for dystonia.
Computational Neuroscience Meeting (CNS 16').
(2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2011). Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex.
Neuroinformatics.
(2011). Synaptic information transfer in computer models of neocortical columns.
J Comput Neurosci. 30, 69-84.
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
Computational Neuroscience Meeting (CNS 14').
(2013). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2016). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2018). Using NEURON for reaction-diffusion modeling of extracellular dynamics.
Frontiers in Neuroinformatics.
(2018). Extracellular reaction–diffusion in the NEURON simulator: modeling ischemic stroke.
Computational Neuroscience Meeting (CNS 18').
(2018). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2019). Efficient in silico 3D intracellular neuron simulation.
Society for Neuroscience 2019 (SFN '19).
(2019). Homeostasis and spreading depolarization in multiscale simulation of ischemic stroke..
Society for Neuroscience 2018 (SFN '19).
(2017). Computer modeling of ischemic stroke.
Drug Discov Today: Dis Model. 30, In press.
(2017). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(1999). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(2018). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2013). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2006). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2017). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2013). Water-tight membranes from neuronal morphology files.
J Neurosci Methods. 220, 167–178.
(2014). Calcium 'impedance mismatch' – the role of geometry on diffusion dynamics.
Society for Neuroscience 2014 (SFN '14).
(2011). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2013). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2018). Building, simulating, and visualizing reaction-diffusion models with NEURON's enhanced rxd module.
Society for Neuroscience 2018 (SFN '18).
(2016). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2018). Building and visualizing reaction–diffusion simulations in NEURON.
Computational Neuroscience Meeting (CNS 18').
(2012). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2016). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2015). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2012). Calcium-electrical interactions: An example of reaction-diffusion in the neuron simulator.
Society for Neuroscience 2012 (SFN '12).
(2014). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(1999). Computer models of stroke recovery: Implications for neurorehabilitation.
The Neuroscientist. 5, 100-111.
(2012). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2008). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting. 3, 284.
(2005). Independent variable timestep integration of individual neurons for network simulations.
17, 903-921.
(2006). Rule-based firing for network simulations.
Neurocomputing. 69, 1160-1164.
(2008). Broadening of activity with flow across neural structures.
Perception. 37, 401-407.
(1992). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1991). Simulations of a phase comparing neuron of the electric fish Eigenmannia.
169, 117-125.
(1997). Brain organization: from molecules to parallel processing.
(Trimble, MR., & Cummings JL., Ed.).Contemporary Behavioral Neurology. 5-28.
(2014). Neocortical simulation for epilepsy surgery guidance: localization and intervention.
(Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.
(1992). Computational Neuroscience.
(Asbury, AK., McKhann GM., & McDonald WI., Ed.).Diseases of the Nervous System: Clinical Neurobiology.
(2006). Neural query system: data-mining from within the NEURON simulator.
Neuroinformatics. 4, 163-176.
(1997). A computer model of clonazepam's effect in a thalamic slice model of absence epilepsy.
Neuroreport. 8, 3339-3343.
(2017). Computers, causality and cure in epilepsy.
Brain. 140, 516-519.
(1999). Can the hippocampus tell time?: The temporo-septal engram shift model.
Neuroreport. 10, 2301-2306.
(1991). Simulations of cortical pyramidal neurons synchronized by inhibitory interneurons.
66, 1059-1079.
(1996). Control of slow oscillations in the thalamocortical neuron: A computer model.
Neuroscience. 70, 673-684.
(1998). Adapting a feedforward heteroassociative network to Hodgkin-Huxley dynamics.
J. Computational Neuroscience. 5, 353-364.
(2007). Just-in-time connectivity for very large neuronal networks.
Computational Neuroscience Meeting (CNS 07').
(2016). Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON.
Neural Comput. 28, 2063-2090.
(2015). Beyond the canon: temporal and spatial multiscale organization in cortex.
Computational Neuroscience Meeting Workshop.
(2007). Data mining through simulation.
Methods Mol Biol. 401, 155-166.
(2005). Computer simulation of epilepsy: implications for seizure spread and behavioral dysfunction.
Epilepsy & Behavior. 7, 336-344.
(1997). Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures.
jnphys. 77, 1679-1696.
(2017). Computer modeling of epilepsy: opportunities for drug discovery.
Drug Discov Today: Dis Model. In press.
(2008). The virtual slice setup.
J Neurosci Methods. 171, 309-315.
(1989). Localization of a leech inhibitory synapse by photo-ablation of individual dendrites.
504, 43-48.
(2002). From Computer to Brain.
(2008). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting.
(2014). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(1996). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1998). Computer Models of Hippocampal Circuit Changes of the Kindling Model of Epilepsy.
Artificial Intelligence in Medicine. 13, 81-98.
(2007). Tonic-clonic transitions in computer simulation.
J Clin Neurophys. 24, 175-181.
(2008). Computer modelling of epilepsy.
Nat Rev Neurosci. 9, 626-637.
(2010). Computer network model predicts dependence of neocortical laminar activation patterns on form of stimulation.
Society for Neuroscience 2010 (SFN '10).