Lab Publications
Reinforcement learning of 2-joint virtual arm reaching in motor cortex simulation.
Computational Neuroscience Meeting (CNS '12).
(2012). Tracking rhythmicity of neural oscillations in the auditory thalamocortical system.
Society for Neuroscience 2019 (SFN '19).
(2019). Virtual slice simulation of resonance in a layered cortical model.
socns. 769, 25.
(2008). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.
Neurosci. 316, 344-366.
(2016). Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex.
Society for Neuroscience.
(2011). Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex.
2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.
(2011). Tracking recurrence of correlation structure in neuronal recordings.
J Neurosci Methods. 275, 1-9.
(2017). Dynamical microstates in primary auditory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Simulating the spread of activation in neocortical circuits. Computational Neuroscience.
Computational Neuroscience.
(2011).
(2013). Calcium regulation of HCN supports persistent activity associated with working memory: A multiscale model of prefrontal cortex.
Society for Neuroscience 2014 (SFN '14).
(2014). Measuring the quality of neuronal identification in ensemble recordings.
jnsci. 31, 16398–16409.
(2011). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015).
(2008). Virtual slice simulation of resonance in a layered cortical model.
Society for Neuroscience.
(2008). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(2017). Using NEURON for reaction-diffusion modeling of extracellular dynamics.
Frontiers in Neuroinformatics.
(2018). Extracellular reaction–diffusion in the NEURON simulator: modeling ischemic stroke.
Computational Neuroscience Meeting (CNS 18').
(2018). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2018). Efficient in silico 3D intracellular neuron simulation.
Society for Neuroscience 2019 (SFN '19).
(2019). Homeostasis and spreading depolarization in multiscale simulation of ischemic stroke..
Society for Neuroscience 2018 (SFN '19).
(2019). Computer modeling of ischemic stroke.
Drug Discov Today: Dis Model. 30, In press.
(2017). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(1999). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2018). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2006). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2014). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Water-tight membranes from neuronal morphology files.
J Neurosci Methods. 220, 167–178.
(2013). Calcium 'impedance mismatch' – the role of geometry on diffusion dynamics.
Society for Neuroscience 2014 (SFN '14).
(2014). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2013). Building, simulating, and visualizing reaction-diffusion models with NEURON's enhanced rxd module.
Society for Neuroscience 2018 (SFN '18).
(2018). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2016). Building and visualizing reaction–diffusion simulations in NEURON.
Computational Neuroscience Meeting (CNS 18').
(2018). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2012). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2016). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2015). Calcium-electrical interactions: An example of reaction-diffusion in the neuron simulator.
Society for Neuroscience 2012 (SFN '12).
(2012). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(2018). Computer network model of mossy fiber sprouting in dentate gyrus.
Epilepsia – AES Proceedings. 37 S. 5, 117.
(1996). A rule-based firing model for neural networks.
Int. J. for Bioelectromagnetism. 7, 47-50.
(2005). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(2008).
(1992). Site-directed mRNA editing of sodium channels has potential to alter neuronal firing and network dynamics: Computer models.
Society for Neuroscience 2017 (SFN '17).
(2017). Modeling thalamocortical oscillations.
(Ulinski, P., Jones EG., & Peters A., Ed.).Cerebral Cortex. 13, 479-509.
(1999). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2012). Computer models of stroke recovery: Implications for neurorehabilitation.
The Neuroscientist. 5, 100-111.
(1999). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting. 3, 284.
(2008). Independent variable timestep integration of individual neurons for network simulations.
17, 903-921.
(2005). Rule-based firing for network simulations.
Neurocomputing. 69, 1160-1164.
(2006). Broadening of activity with flow across neural structures.
Perception. 37, 401-407.
(2008).
(1991). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1992). Brain organization: from molecules to parallel processing.
(Trimble, MR., & Cummings JL., Ed.).Contemporary Behavioral Neurology. 5-28.
(1997). Neocortical simulation for epilepsy surgery guidance: localization and intervention.
(Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.
(2014). Computational Neuroscience.
(Asbury, AK., McKhann GM., & McDonald WI., Ed.).Diseases of the Nervous System: Clinical Neurobiology.
(1992). A computer model of clonazepam's effect in a thalamic slice model of absence epilepsy.
Neuroreport. 8, 3339-3343.
(1997). Neural query system: data-mining from within the NEURON simulator.
Neuroinformatics. 4, 163-176.
(2006). Computers, causality and cure in epilepsy.
Brain. 140, 516-519.
(2017).
(1991). Can the hippocampus tell time?: The temporo-septal engram shift model.
Neuroreport. 10, 2301-2306.
(1999). Control of slow oscillations in the thalamocortical neuron: A computer model.
Neuroscience. 70, 673-684.
(1996). Adapting a feedforward heteroassociative network to Hodgkin-Huxley dynamics.
J. Computational Neuroscience. 5, 353-364.
(1998). Just-in-time connectivity for very large neuronal networks.
Computational Neuroscience Meeting (CNS 07').
(2007). Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON.
Neural Comput. 28, 2063-2090.
(2016). Beyond the canon: temporal and spatial multiscale organization in cortex.
Computational Neuroscience Meeting Workshop.
(2015). Data mining through simulation.
Methods Mol Biol. 401, 155-166.
(2007). Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures.
jnphys. 77, 1679-1696.
(1997). Computer simulation of epilepsy: implications for seizure spread and behavioral dysfunction.
Epilepsy & Behavior. 7, 336-344.
(2005). Computer modeling of epilepsy: opportunities for drug discovery.
Drug Discov Today: Dis Model. In press.
(2017). The virtual slice setup.
J Neurosci Methods. 171, 309-315.
(2008).
(1989). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting.
(2008).