Lab Publications
Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(2008). Direct dyslexia: Preserved oral reading of real words in Wernicke's aphasia.
Brain. 112, 583-594.
(1989). Multiscale modeling in the clinic: diseases of the brain and nervous system.
Brain Inform. 4, 219-230.
(2017).
(2015). Hybrid neural networks - combining abstract and realistic neural units.
IEEE Engineering in Medicine and Biology Society Proceedings. 6, 3996-3998.
(2004). A rule-based firing model for neural networks.
Int. J. for Bioelectromagnetism. 7, 47-50.
(2005). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(2018). Computer network model of mossy fiber sprouting in dentate gyrus.
Epilepsia – AES Proceedings. 37 S. 5, 117.
(1996). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(2008).
(1992). Site-directed mRNA editing of sodium channels has potential to alter neuronal firing and network dynamics: Computer models.
Society for Neuroscience 2017 (SFN '17).
(2017). Modeling thalamocortical oscillations.
(Ulinski, P., Jones EG., & Peters A., Ed.).Cerebral Cortex. 13, 479-509.
(1999). Computer models of stroke recovery: Implications for neurorehabilitation.
The Neuroscientist. 5, 100-111.
(1999). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2012). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting. 3, 284.
(2008). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2017). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Repairing Lesions via Kernel Adaptive Inverse Control in a Biomimetic Model of Sensorimotor Cortex.
Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. 1-4.
(2015). Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.
Journal of Computational Surgery. 3, 12.
(2014). Computer model of a theta-gamma dissociation in hippocampus.
Society for Neuroscience 2009 (SFN '09).
(2009). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience Abstracts. 44,
(2014). Global dynamics of selective attention and its lapses in primary auditory cortex.
Nat Neurosci. In press.
(2016). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience 2014 (SFN '14).
(2014). Grid-cell models for navigation and context discrimination.
Society for Neuroscience 2009 (SFN '09).
(2009). Modeling pathogenesis and treatment response in childhood absence epilepsy.
Epilepsia. 59, 135–145.
(2018). Interlaminar Granger causality and alpha oscillations in a model of macaque cortex.
Computational Neuroscience.
(2011). Multiscale modeling of cortical information flow in Parkinson's disease.
Computational Neuroscience Meeting (CNS '13).
(2013). Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies.
Society for Neuroscience.
(2011). Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment.
Neural Control of Movement (NCM) meeting.
(2014). Computational capacity as a function of network size.
Society for Neuroscience 2016 (SFN '16).
(2016). Effects of basal ganglia on cortical computation: A hybrid network/neural field model.
Society for Neuroscience 2012 (SFN '12).
(2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.
IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
(2012). Modulation of stimulus fields in a computer model of the thalamocortical system.
Society for Neuroscience.
(2011). Optimization by Adaptive Stochastic Descent.
PLOS ONE. 13, 1-16.
(2018). Receptive field formation and erasure in somatosensory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Effects of basal ganglia on cortical computation: a hybrid network/neural field model.
Society for Neuroscience.
(2012). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
BMC Neuroscience. 15, P107.
(2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Cortical information flow in Parkinson's disease: a composite network/field model.
Front Comput Neurosci. 7, 39.
(2013). Development of In Silico Brain for DARPA REPAIR project.
DARPA Neural Engineering, Science, and Technology Meeting.
(2010). Dendritic resonance in a detailed model of pyramidal tract neuron of mouse primary motor cortex.
Society for Neuroscience 2019 (SFN '19).
(2019).
(1997).
(1997). Computational Neuroscience (CNS*2009).
BMC Neuroscience. 10, I1.
(2009).
(2018).
Computational Neuroscience (CNS*2007).
BMC Neuroscience. 8, I1.
(2007). Computational Neuroscience (CNS*2008).
BMC Neuroscience. 9, I1.
(2008). Interfaces in multiscale reaction-diffusion models in the NEURON simulator.
Society for Neuroscience 2013 (SFN '13).
(2013). Ih modulates theta rhythm and synchrony in computer model of CA3.
Computational Neuroscience Meeting (CNS 12').
(2012). Computational Intelligence in Electrophysiology.
Studies in Computational Intelligence. 122, 325-359.
(2008). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies.
Society for Neuroscience 2018 (SFN '18).
(2018). Modeling network effects of dendritic plateau potentials in cortical pyramidal neurons.
Society for Neuroscience 2019 (SFN '19).
(2019). Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits.
bioRxiv. 229484.
(2018). A set of curated cortical models at multiple scales on Open Source Brain.
Computational Neuroscience Meeting (CNS 16').
(2016). Dendritic plateau generation model in cortical pyramidal neurons: A link to cortical ensembles.
Society for Neuroscience 2017 (SFN '17).
(2017). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Creating the synthetic brain through hybrid computational and biological systems repairing and replacing neural networks.
Society for Neuroscience 2010 (SFN '10).
(2010). Perisaccadic parietal and occipital gamma power in light and in complete darkness.
Perception. 37, 419-432.
(2008). Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space.
jnsci. 28, 11250-11262.
(2008). Attention-like modulation of hippocampus place cell discharge.
J Neurosci. 30, 4613-4625.
(2010). Disinhibition can account for the neural discoordination associated with impaired cognitive control.
Society for Neuroscience 2009 (SFN '09).
(2009). Ten "not so simple" rules for credible practice of modeling & simulation in healthcare.
Frontiers in Medical Devices Meeting.
(2015). Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity.
Front Neural Circuits. 8, 16.
(2014). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015). Effect of network size on computational capacity.
Computational Neuroscience Meeting (CNS 16').
(2016). Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm.
Front Neurosci. 10, 28.
(2016). Response to simultaneous long-range inputs and oscillatory inputs in a multiscale model of M1 microcircuits.
Society for Neuroscience 2019 (SFN '19).
(2019).
(2018). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience.
(2016). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience Meeting (CNS 16').
(2016). Data-driven model of auditory thalamocortical system rhythms.
Society for Neuroscience (SFN '19).
(2019).
(2018).