Lab Publications
Computer modeling of epilepsy: opportunities for drug discovery.
Drug Discov Today: Dis Model. In press.
(2017). The virtual slice setup.
J Neurosci Methods. 171, 309-315.
(2008).
(1989).
(2002). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting.
(2008). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(2014). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1996). Tonic-clonic transitions in computer simulation.
J Clin Neurophys. 24, 175-181.
(2007). Computer Models of Hippocampal Circuit Changes of the Kindling Model of Epilepsy.
Artificial Intelligence in Medicine. 13, 81-98.
(1998). Computer modelling of epilepsy.
Nat Rev Neurosci. 9, 626-637.
(2008). Computer network model predicts dependence of neocortical laminar activation patterns on form of stimulation.
Society for Neuroscience 2010 (SFN '10).
(2010).
(2002).
(2013). Unmasking unmasked: Neural dynamics following stroke.
Progress in Brain Research. 121, 203-218.
(1999). Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(2008). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2017). Repairing Lesions via Kernel Adaptive Inverse Control in a Biomimetic Model of Sensorimotor Cortex.
Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. 1-4.
(2015). Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.
Journal of Computational Surgery. 3, 12.
(2014). Computer model of a theta-gamma dissociation in hippocampus.
Society for Neuroscience 2009 (SFN '09).
(2009). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience Abstracts. 44,
(2014). Global dynamics of selective attention and its lapses in primary auditory cortex.
Nat Neurosci. In press.
(2016). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience 2014 (SFN '14).
(2014). Grid-cell models for navigation and context discrimination.
Society for Neuroscience 2009 (SFN '09).
(2009). Modeling pathogenesis and treatment response in childhood absence epilepsy.
Epilepsia. 59, 135–145.
(2018). Development of In Silico Brain for DARPA REPAIR project.
DARPA Neural Engineering, Science, and Technology Meeting.
(2010). Interlaminar Granger causality and alpha oscillations in a model of macaque cortex.
Computational Neuroscience.
(2011). Multiscale modeling of cortical information flow in Parkinson's disease.
Computational Neuroscience Meeting (CNS '13).
(2013). Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies.
Society for Neuroscience.
(2011). Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment.
Neural Control of Movement (NCM) meeting.
(2014). Computational capacity as a function of network size.
Society for Neuroscience 2016 (SFN '16).
(2016). Effects of basal ganglia on cortical computation: A hybrid network/neural field model.
Society for Neuroscience 2012 (SFN '12).
(2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.
IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
(2012). Modulation of stimulus fields in a computer model of the thalamocortical system.
Society for Neuroscience.
(2011). Optimization by Adaptive Stochastic Descent.
PLOS ONE. 13, 1-16.
(2018). Receptive field formation and erasure in somatosensory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Effects of basal ganglia on cortical computation: a hybrid network/neural field model.
Society for Neuroscience.
(2012). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
BMC Neuroscience. 15, P107.
(2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Cortical information flow in Parkinson's disease: a composite network/field model.
Front Comput Neurosci. 7, 39.
(2013). Dendritic resonance in a detailed model of pyramidal tract neuron of mouse primary motor cortex.
Society for Neuroscience 2019 (SFN '19).
(2019).
(1997).
(1997). Computational Neuroscience (CNS*2009).
BMC Neuroscience. 10, I1.
(2009).
(2018).
Computational Neuroscience (CNS*2007).
BMC Neuroscience. 8, I1.
(2007). Computational Neuroscience (CNS*2008).
BMC Neuroscience. 9, I1.
(2008). Interfaces in multiscale reaction-diffusion models in the NEURON simulator.
Society for Neuroscience 2013 (SFN '13).
(2013). Ih modulates theta rhythm and synchrony in computer model of CA3.
Computational Neuroscience Meeting (CNS 12').
(2012). Computational Intelligence in Electrophysiology.
Studies in Computational Intelligence. 122, 325-359.
(2008). Modeling network effects of dendritic plateau potentials in cortical pyramidal neurons.
Society for Neuroscience 2019 (SFN '19).
(2019). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies.
Society for Neuroscience 2018 (SFN '18).
(2018). Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits.
bioRxiv. 229484.
(2018). A set of curated cortical models at multiple scales on Open Source Brain.
Computational Neuroscience Meeting (CNS 16').
(2016). Dendritic plateau generation model in cortical pyramidal neurons: A link to cortical ensembles.
Society for Neuroscience 2017 (SFN '17).
(2017). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Creating the synthetic brain through hybrid computational and biological systems repairing and replacing neural networks.
Society for Neuroscience 2010 (SFN '10).
(2010). Perisaccadic parietal and occipital gamma power in light and in complete darkness.
Perception. 37, 419-432.
(2008). Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space.
jnsci. 28, 11250-11262.
(2008). Attention-like modulation of hippocampus place cell discharge.
J Neurosci. 30, 4613-4625.
(2010). Disinhibition can account for the neural discoordination associated with impaired cognitive control.
Society for Neuroscience 2009 (SFN '09).
(2009). Ten "not so simple" rules for credible practice of modeling & simulation in healthcare.
Frontiers in Medical Devices Meeting.
(2015). Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity.
Front Neural Circuits. 8, 16.
(2014). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control.
24th Annual Computational Neuroscience Meeting (CNS15).
(2015). The role of feedback in a hierarchical model of object perception.
Proceedings of BICS 2010 - Brain Inspired Cognitive Systems 14-16 July 2010, Madrid, Spain..
(2010). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits.
Society for Neuroscience 2017 (SFN '17).
(2017). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2014). Top-Down Feedback in an HMAX-Like Cortical Model of Object Perception Based on Hierarchical Bayesian Networks and Belief Propagation.
PLoS One. 7, e48216.
(2012). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm.
Society for Neuroscience 2013 (SFN '13).
(2013). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.
IBM Journal of Research and Development. 61, 6–1.
(2017). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2018). NetPyNE, a tool for data-driven multiscale modeling of brain circuits.
eLife. 8, e44494.
(2019).