Lab Publications
Information processing in homeostatically regulated hippocampal neurons.
Society for Neuroscience 2009 (SFN '09).
(2009). Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment.
Neural Control of Movement (NCM) meeting.
(2014). Independent variable timestep integration of individual neurons for network simulations.
17, 903-921.
(2005). Independent dendritic domains in the thalamic circuit.
Neurocomputing. 32, 299–305.
(2000). Implementation of Cmicrocircuits model in NetPyNE and exploration of the effect of neuronal/synaptic loss on memory recall.
Computational Neuroscience Meeting (CNS 18').
(2018). Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3.
Hippocampus. in press.
(2015). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.
PLoS One. 8, e76285.
(2013). Ih modulates theta rhythm and synchrony in computer model of CA3.
Computational Neuroscience Meeting (CNS 12').
(2012). Identifying avalanches in simulated mouse primary motor cortex (M1).
Society for Neuroscience 2018 (SFN '18).
(2018). Hybrid neural networks - combining abstract and realistic neural units.
IEEE Engineering in Medicine and Biology Society Proceedings. 6, 3996-3998.
(2004). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2015).
(2011). Homeostasis and spreading depolarization in multiscale simulation of ischemic stroke..
Society for Neuroscience 2018 (SFN '19).
(2019). Grid-cell models for navigation and context discrimination.
Society for Neuroscience 2009 (SFN '09).
(2009). Global dynamics of selective attention and its lapses in primary auditory cortex.
Nat Neurosci. In press.
(2016). Geppetto: an open source visualisation and simulation platform for neuroscience.
Computational Neuroscience Meeting (CNS 17').
(2017). Geppetto: a reusable modular open platform for exploring neuroscience data and models.
Phil. Trans. R. Soc. B. 373, 20170380.
(2018). Genome-wide associations of schizophrenia studied with computer simulation.
(Cutsuridis, V., Graham BP., Cobb S., & Vida I., Ed.).Hippocampal Microcircuits: A Computational Modeler's Resource Book. 2,
(2018).
(1997).
(2002).
Extracellular reaction–diffusion in the NEURON simulator: modeling ischemic stroke.
Computational Neuroscience Meeting (CNS 18').
(2018). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2016). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.
IBM Journal of Research and Development. 61, 6–1.
(2017). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm..
Neural Control of Movement.
(2014). Emergent oscillations in neocortex: a simulation study.
Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.
(2010). Emergence of physiological oscillation frequencies in a computer model of neocortex.
Front Comput Neurosci. 5, 19.
(2011). Embedded ensemble encoding hypothesis: The role of the ``Prepared'' cell.
J. Neurosci. Res..
(2018). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies.
Society for Neuroscience 2018 (SFN '18).
(2018). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease.
Front Comput Neurosci. 8, 39.
(2014). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.
IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
(2012). Efficient in silico 3D intracellular neuron simulation.
Society for Neuroscience 2019 (SFN '19).
(2019). Effects of basal ganglia on cortical computation: a hybrid network/neural field model.
Society for Neuroscience.
(2012). Effects of basal ganglia on cortical computation: A hybrid network/neural field model.
Society for Neuroscience 2012 (SFN '12).
(2012). Effect of network size on computational capacity.
Computational Neuroscience Meeting (CNS 16').
(2016). Dynamically repairing and replacing neural networks: using hybrid computational and biological tools.
{IEEE} Pulse. 3, 57-59.
(2012). Dynamical microstates in primary auditory cortex.
Society for Neuroscience Abstracts. 43,
(2013). Dynamical microstates in primary auditory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures.
jnphys. 77, 1679-1696.
(1997). A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models.
IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.
(2015). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
International Conference on Cognititve and Neural Systems 16.
(2012). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
Society for Neuroscience.
(2012). Disinhibition can account for the neural discoordination associated with impaired cognitive control.
Society for Neuroscience 2009 (SFN '09).
(2009). Direct dyslexia: Preserved oral reading of real words in Wernicke's aphasia.
Brain. 112, 583-594.
(1989). Development of In Silico Brain for DARPA REPAIR project.
DARPA Neural Engineering, Science, and Technology Meeting.
(2010).
(2002). Dendritic resonance in a detailed model of pyramidal tract neuron of mouse primary motor cortex.
Society for Neuroscience 2019 (SFN '19).
(2019). Dendritic plateau generation model in cortical pyramidal neurons: A link to cortical ensembles.
Society for Neuroscience 2017 (SFN '17).
(2017). Dendritic morphology of corticospinal and crossed-corticostriatal neurons in mouse primary motor cortex.
Society for Neuroscience 2016 (SFN '16).
(2016). Data-driven model of auditory thalamocortical system rhythms.
Society for Neuroscience (SFN '19).
(2019). Data mining through simulation.
Methods Mol Biol. 401, 155-166.
(2007). Data mining of time-domain features from neural extracellular field data.
Studies in Computational Intelligence. 151, 119-140.
(2008). Cross-frequency coupling and information flow in a multiscale model of M1 microcircuits.
Society for Neuroscience (SFN'19).
(2019). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2018). Creating the synthetic brain through hybrid computational and biological systems repairing and replacing neural networks.
Society for Neuroscience 2010 (SFN '10).
(2010). CPP alters theta/gamma oscillations in rat hippocampus: simulation and experiment.
Computational Neuroscience Meeting (CNS 12').
(2012). CPP alters hippocampal CA1 oscillations in rat: simulation and experiment.
Computational Neuroscience.
(2012). CPP alters cross-frequency coupling between theta and gamma in CA1 in rats: Simulation and experiment.
Society for Neuroscience 2012 (SFN '12).
(2012). Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm.
Frontiers in Neurorobotics. 9,
(2015). Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex.
PLoS One. 8, e57453.
(2013). Cortical information flow in Parkinson's disease: a composite network/field model.
Front Comput Neurosci. 7, 39.
(2013). Cortical ensembles based on dendritic plateau generation in the prefrontal cortex.
Society for Neuroscience 2017 (SFN '17).
(2017). Control of slow oscillations in the thalamocortical neuron: A computer model.
Neuroscience. 70, 673-684.
(1996). Computers, causality and cure in epilepsy.
Brain. 140, 516-519.
(2017). Computer simulations of EPSP-to-spike (E-S) potentiation in hippocampal CA1 pyramidal cells.
12, 607-618.
(1992). Computer simulation of epilepsy: implications for seizure spread and behavioral dysfunction.
Epilepsy & Behavior. 7, 336-344.
(2005). Computer network model predicts dependence of neocortical laminar activation patterns on form of stimulation.
Society for Neuroscience 2010 (SFN '10).
(2010). Computer network model of mossy fiber sprouting in dentate gyrus.
Epilepsia – AES Proceedings. 37 S. 5, 117.
(1996). Computer models of stroke recovery: Implications for neurorehabilitation.
The Neuroscientist. 5, 100-111.
(1999). Computer models of mouse area M1 show avalanches for full model and subcircuits defined by layer or cell type.
Society for Neuroscience 2019 (SFN '19).
(2019). Computer Models of Hippocampal Circuit Changes of the Kindling Model of Epilepsy.
Artificial Intelligence in Medicine. 13, 81-98.
(1998). Computer modelling of epilepsy.
Nat Rev Neurosci. 9, 626-637.
(2008). Computer modeling of ischemic stroke.
Drug Discov Today: Dis Model. 30, In press.
(2017). Computer modeling of ischemic stroke.
Scholarpedia. 10, 32015; revision \#148671; Accessed Oct 12, 2015.
(2015). Computer modeling of epilepsy: opportunities for drug discovery.
Drug Discov Today: Dis Model. In press.
(2017). Computer modeling for pharmacological treatments for dystonia.
Drug Discov Today: Dis Model. In Press.
(2017).