Lab Publications
Embedded ensemble encoding hypothesis: The role of the ``Prepared'' cell.
J. Neurosci. Res..
(2018). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease.
Front Comput Neurosci. 8, 39.
(2014). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.
IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
(2012). Dynamically repairing and replacing neural networks: using hybrid computational and biological tools.
{IEEE} Pulse. 3, 57-59.
(2012). Dynamical microstates in primary auditory cortex.
Society for Neuroscience Abstracts. 43,
(2013). Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures.
jnphys. 77, 1679-1696.
(1997). Direct dyslexia: Preserved oral reading of real words in Wernicke's aphasia.
Brain. 112, 583-594.
(1989).
(2002). Data mining through simulation.
Methods Mol Biol. 401, 155-166.
(2007). Data mining of time-domain features from neural extracellular field data.
Studies in Computational Intelligence. 151, 119-140.
(2008). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2018). Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm.
Frontiers in Neurorobotics. 9,
(2015). Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex.
PLoS One. 8, e57453.
(2013). Cortical information flow in Parkinson's disease: a composite network/field model.
Front Comput Neurosci. 7, 39.
(2013). Control of slow oscillations in the thalamocortical neuron: A computer model.
Neuroscience. 70, 673-684.
(1996). Computers, causality and cure in epilepsy.
Brain. 140, 516-519.
(2017). Computer simulations of EPSP-to-spike (E-S) potentiation in hippocampal CA1 pyramidal cells.
12, 607-618.
(1992). Computer simulation of epilepsy: implications for seizure spread and behavioral dysfunction.
Epilepsy & Behavior. 7, 336-344.
(2005). Computer network model of mossy fiber sprouting in dentate gyrus.
Epilepsia – AES Proceedings. 37 S. 5, 117.
(1996). Computer models of stroke recovery: Implications for neurorehabilitation.
The Neuroscientist. 5, 100-111.
(1999). Computer Models of Hippocampal Circuit Changes of the Kindling Model of Epilepsy.
Artificial Intelligence in Medicine. 13, 81-98.
(1998). Computer modelling of epilepsy.
Nat Rev Neurosci. 9, 626-637.
(2008). Computer modeling of ischemic stroke.
Drug Discov Today: Dis Model. 30, In press.
(2017). Computer modeling of ischemic stroke.
Scholarpedia. 10, 32015; revision \#148671; Accessed Oct 12, 2015.
(2015). Computer modeling of epilepsy: opportunities for drug discovery.
Drug Discov Today: Dis Model. In press.
(2017). Computer modeling for pharmacological treatments for dystonia.
Drug Discov Today: Dis Model. In Press.
(2017). Computer model of passive signal integration based on whole-cell ınvit\ studies of rat lateral geniculate nucleus.
European Journal of Neuroscience. 17, 1531-1541.
(2003).
(1992). A computer model of clonazepam's effect in a thalamic slice model of absence epilepsy.
Neuroreport. 8, 3339-3343.
(1997). Computer model of antiepileptic effects mediated by alterations in \gabaa\-mediated inhibition.
Neuroreport. 9, 691-696.
(1998). Computational Intelligence in Electrophysiology.
Studies in Computational Intelligence. 122, 325-359.
(2008). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting. 3, 284.
(2008). Can the hippocampus tell time?: The temporo-septal engram shift model.
Neuroreport. 10, 2301-2306.
(1999). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
BMC Neuroscience. 15, P108.
(2014). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.
Neurosci. 316, 344-366.
(2016). Burst Firing in Identified Interneurons of the Rat Lateral Geniculate Nucleus.
Neuroscience. 91, 1445-1460.
(1999). Broadening of activity with flow across neural structures.
Perception. 37, 401-407.
(2008). Attention-like modulation of hippocampus place cell discharge.
J Neurosci. 30, 4613-4625.
(2010). Alternating dominance of NMDA and AMPA for learning and recall: a computer model.
Neuroreport. 12, 2503-2507.
(2001). Adapting a feedforward heteroassociative network to Hodgkin-Huxley dynamics.
J. Computational Neuroscience. 5, 353-364.
(1998). Virtual slice simulation of resonance in a layered cortical model.
Society for Neuroscience.
(2008). Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning.
Signal Processing in Medicine and Biology Symposium (SPMB), 2013 IEEE. 1-5.
(2013). Transformation of inputs in a model of the rat hippocampal CA1 network.
Society for Neuroscience 2010 (SFN '10).
(2010). Transformation of inputs in a model of the rat hippocampal CA1 network.
Computational Neuroscience Meeting (CNS 10').
(2010). Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex.
2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.
(2011). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience 2014 (SFN '14).
(2014). Ten "not so simple" rules for credible practice of modeling & simulation in healthcare.
Frontiers in Medical Devices Meeting.
(2015). Stochastic diffusion simulation in NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Standardized assessment of extracellular single unit isolation quality.
Society for Neuroscience.
(2008). Spiking network modeling of neuronal dynamics in individual rats.
BMC Neuroscience.
(2015). Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex.
Neuroinformatics.
(2011). Site-directed mRNA editing of sodium channels has potential to alter neuronal firing and network dynamics: Computer models.
Society for Neuroscience 2017 (SFN '17).
(2017). Simulation of avalanches in mouse primary motor cortex (M1).
Computational Neuroscience Meeting (CNS 18').
(2018). Simulating the spread of activation in neocortical circuits. Computational Neuroscience.
Computational Neuroscience.
(2011). Schizophrenia genome-wide association studied with computer simulation: gamma oscillations and information flow in CA3.
Society for Neuroscience 2016 (SFN '16).
(2016). Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex.
Society for Neuroscience.
(2011). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2014). Repairing Lesions via Kernel Adaptive Inverse Control in a Biomimetic Model of Sensorimotor Cortex.
Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. 1-4.
(2015). Reinforcement learning of 2-joint virtual arm reaching in motor cortex simulation.
Computational Neuroscience Meeting (CNS '12).
(2012). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensory and motor cortex.
Society for Neuroscience 2012 (SFN '12).
(2012). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior.
Society for Neuroscience 2010 (SFN '10).
(2010). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Receptive field formation and erasure in somatosensory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Parallelizing large networks using NEURON-Python.
BMC Neuroscience.
(2015). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015).