Lab Publications
Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex.
Society for Neuroscience 2015 (SFN '15).
(2015). Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience.
(2016). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2018). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale modeling of cortical information flow in Parkinson's disease.
Computational Neuroscience Meeting (CNS '13).
(2013). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale computer modeling of penumbral zones in brain ischemia.
Society for Neuroscience 2017 (SFN '17).
(2017). Motor cortex neurons: from experiment to model via evolutionary algorithms.
Computational Neuroscience.
(2015). Mosaic multiscale computer modeling of ischemic stroke.
Society for Neuroscience 2016 (SFN '16).
(2016). Modulation of stimulus fields in a computer model of the thalamocortical system.
Society for Neuroscience.
(2011). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(2017). Microconnectomics of primary motor cortex: a multiscale computer model.
Multiscale Modeling. National Institutes of Health.
(2015). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2014). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits.
Society for Neuroscience 2017 (SFN '17).
(2017). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control.
24th Annual Computational Neuroscience Meeting (CNS15).
(2015). Just-in-time connectivity for very large neuronal networks.
Computational Neuroscience Meeting (CNS 07').
(2007). Interlaminar Granger causality and alpha oscillations in a model of macaque cortex.
Computational Neuroscience.
(2011). Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies.
Society for Neuroscience.
(2011). Interictal EEG discoordination in a rat seizure model.
Statistical Analysis of Neuronal Data.
(2010). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm.
Society for Neuroscience 2013 (SFN '13).
(2013). Interfaces in multiscale reaction-diffusion models in the NEURON simulator.
Society for Neuroscience 2013 (SFN '13).
(2013). Integrating Systems Biology Markup Language (SBML) with NEURON.
Computational Neuroscience.
(2014). Integrating Systems Biology Markup Language (SBML) with NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Information transmission vs processing in computer models of neocortical columns.
Society for Neuroscience 2009 (SFN '09).
(2009). Implementation of Cmicrocircuits model in NetPyNE and exploration of the effect of neuronal/synaptic loss on memory recall.
Computational Neuroscience Meeting (CNS 18').
(2018). Ih modulates theta rhythm and synchrony in computer model of CA3.
Computational Neuroscience Meeting (CNS 12').
(2012). Identifying avalanches in simulated mouse primary motor cortex (M1).
Society for Neuroscience 2018 (SFN '18).
(2018). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2015). Grid-cell models for navigation and context discrimination.
Society for Neuroscience 2009 (SFN '09).
(2009). Extracellular reaction–diffusion in the NEURON simulator: modeling ischemic stroke.
Computational Neuroscience Meeting (CNS 18').
(2018). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2016). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm..
Neural Control of Movement.
(2014). Emergent oscillations in neocortex: a simulation study.
Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.
(2010). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies.
Society for Neuroscience 2018 (SFN '18).
(2018). Effects of basal ganglia on cortical computation: A hybrid network/neural field model.
Society for Neuroscience 2012 (SFN '12).
(2012). Effects of basal ganglia on cortical computation: a hybrid network/neural field model.
Society for Neuroscience.
(2012). Dynamical microstates in primary auditory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models.
IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.
(2015). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
International Conference on Cognititve and Neural Systems 16.
(2012). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
Society for Neuroscience.
(2012). Disinhibition can account for the neural discoordination associated with impaired cognitive control.
Society for Neuroscience 2009 (SFN '09).
(2009). Development of In Silico Brain for DARPA REPAIR project.
DARPA Neural Engineering, Science, and Technology Meeting.
(2010). Dendritic plateau generation model in cortical pyramidal neurons: A link to cortical ensembles.
Society for Neuroscience 2017 (SFN '17).
(2017). Dendritic morphology of corticospinal and crossed-corticostriatal neurons in mouse primary motor cortex.
Society for Neuroscience 2016 (SFN '16).
(2016). Data-driven model of auditory thalamocortical system rhythms.
Society for Neuroscience (SFN '19).
(2019). Cross-frequency coupling and information flow in a multiscale model of M1 microcircuits.
Society for Neuroscience (SFN'19).
(2019). Creating the synthetic brain through hybrid computational and biological systems repairing and replacing neural networks.
Society for Neuroscience 2010 (SFN '10).
(2010). CPP alters theta/gamma oscillations in rat hippocampus: simulation and experiment.
Computational Neuroscience Meeting (CNS 12').
(2012). CPP alters hippocampal CA1 oscillations in rat: simulation and experiment.
Computational Neuroscience.
(2012). CPP alters cross-frequency coupling between theta and gamma in CA1 in rats: Simulation and experiment.
Society for Neuroscience 2012 (SFN '12).
(2012). Cortical ensembles based on dendritic plateau generation in the prefrontal cortex.
Society for Neuroscience 2017 (SFN '17).
(2017). Computer network model predicts dependence of neocortical laminar activation patterns on form of stimulation.
Society for Neuroscience 2010 (SFN '10).
(2010). Computer model of endocannabinoid effects in CA3.
Society for Neuroscience 2015 (SFN '15).
(2015). Computer model of a theta-gamma dissociation in hippocampus.
Society for Neuroscience 2009 (SFN '09).
(2009). Computational capacity as a function of network size.
Society for Neuroscience 2016 (SFN '16).
(2016). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting.
(2008). Calcium-electrical interactions: An example of reaction-diffusion in the neuron simulator.
Society for Neuroscience 2012 (SFN '12).
(2012). Calcium wave propagation varies with changes in endoplasmic reticulum parameters: A computer model.
Society for Neuroscience 2013 (SFN '13).
(2013). Calcium regulation of HCN supports persistent activity associated with working memory: A multiscale model of prefrontal cortex.
Society for Neuroscience 2014 (SFN '14).
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Calcium 'impedance mismatch' – the role of geometry on diffusion dynamics.
Society for Neuroscience 2014 (SFN '14).
(2014). Building, simulating, and visualizing reaction-diffusion models with NEURON's enhanced rxd module.
Society for Neuroscience 2018 (SFN '18).
(2018). Building and visualizing reaction–diffusion simulations in NEURON.
Computational Neuroscience Meeting (CNS 18').
(2018). Beyond the canon: temporal and spatial multiscale organization in cortex.
Computational Neuroscience Meeting Workshop.
(2015). Beta oscillations in neocortex: A multiscale modeling study.
Society for Neuroscience 2016 (SFN '16).
(2016). Attentional modulation of receptive fields in a computer model of the thalamocortical system.
Society for Neuroscience 2011 (SFN '11).
(2011). Altered information transfer in neuronal networks marks pathology.
Computational Neuroscience Meeting (CNS 10').
(2010). Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(2008). Neocortical simulation for epilepsy surgery guidance: localization and intervention.
(Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.
(2014). Genome-wide associations of schizophrenia studied with computer simulation.
(Cutsuridis, V., Graham BP., Cobb S., & Vida I., Ed.).Hippocampal Microcircuits: A Computational Modeler's Resource Book. 2,
(2018).
(2013).