Lab Publications
NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON.
Society for Neuroscience 2018 (SFN '18).
(2018). Cross-frequency coupling and information flow in a multiscale model of M1 microcircuits.
Society for Neuroscience (SFN'19).
(2019).
(2011). A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models.
IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.
(2015). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
Computational Neuroscience Meeting (CNS '14). 15, P106.
(2014). Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.
Pattern Recognit Lett. 36, 204–212.
(2014). Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning.
Signal Processing in Medicine and Biology Symposium (SPMB), 2013 IEEE. 1-5.
(2013). The role of feedback in a hierarchical model of object perception.
Proceedings of BICS 2010 - Brain Inspired Cognitive Systems 14-16 July 2010, Madrid, Spain..
(2010). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control.
24th Annual Computational Neuroscience Meeting (CNS15).
(2015). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits.
Society for Neuroscience 2017 (SFN '17).
(2017). Top-Down Feedback in an HMAX-Like Cortical Model of Object Perception Based on Hierarchical Bayesian Networks and Belief Propagation.
PLoS One. 7, e48216.
(2012). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2014). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm.
Society for Neuroscience 2013 (SFN '13).
(2013). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.
IBM Journal of Research and Development. 61, 6–1.
(2017). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2018). NetPyNE, a tool for data-driven multiscale modeling of brain circuits.
eLife. 8, e44494.
(2019). Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks.
International Journal of Neural Systems. 23, 1350021.
(2013). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm..
Neural Control of Movement.
(2014). Effect of network size on computational capacity.
Computational Neuroscience Meeting (CNS 16').
(2016). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015). Simulation of avalanches in mouse primary motor cortex (M1).
Computational Neuroscience Meeting (CNS 18').
(2018). Computer models of mouse area M1 show avalanches for full model and subcircuits defined by layer or cell type.
Society for Neuroscience 2019 (SFN '19).
(2019). Identifying avalanches in simulated mouse primary motor cortex (M1).
Society for Neuroscience 2018 (SFN '18).
(2018). Inhibition Can Disrupt Hypersynchrony In Model Neuronal Networks.
Progress in neuro-psychopharmacology & biological psychiatry.
(1997). 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1.
BMC Neuroscience. 18, 58.
(2017). Alternating dominance of NMDA and AMPA for learning and recall: a computer model.
Neuroreport. 12, 2503-2507.
(2001). Spiking network modeling of neuronal dynamics in individual rats.
BMC Neuroscience.
(2015). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
Society for Neuroscience.
(2012). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
International Conference on Cognititve and Neural Systems 16.
(2012). Motor cortex microcircuit simulation based on brain activity mapping.
Neural Comput. 26, 1239–1262.
(2014). Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex.
PLoS One. 7, e47251.
(2012). Geppetto: an open source visualisation and simulation platform for neuroscience.
Computational Neuroscience Meeting (CNS 17').
(2017). Geppetto: a reusable modular open platform for exploring neuroscience data and models.
Phil. Trans. R. Soc. B. 373, 20170380.
(2018). Integrating Systems Biology Markup Language (SBML) with NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Integrating Systems Biology Markup Language (SBML) with NEURON.
Computational Neuroscience.
(2014). Computer model of passive signal integration based on whole-cell ınvit\ studies of rat lateral geniculate nucleus.
European Journal of Neuroscience. 17, 1531-1541.
(2003). Independent dendritic domains in the thalamic circuit.
Neurocomputing. 32, 299–305.
(2000).
(1999). Understanding epilepsy across spatial and time scales.
Society for Neuroscience 2018 (SFN '18).
(2018). Embedded ensemble encoding hypothesis: The role of the ``Prepared'' cell.
J. Neurosci. Res..
(2018). Cortical ensembles based on dendritic plateau generation in the prefrontal cortex.
Society for Neuroscience 2017 (SFN '17).
(2017).
(2019).