Lab Publications
Water-tight membranes from neuronal morphology files.
J Neurosci Methods. 220, 167–178.
(2013). Virtual slice simulation of resonance in a layered cortical model.
Society for Neuroscience.
(2008). The virtual slice setup.
J Neurosci Methods. 171, 309-315.
(2008). Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning.
Signal Processing in Medicine and Biology Symposium (SPMB), 2013 IEEE. 1-5.
(2013). Using NEURON for reaction-diffusion modeling of extracellular dynamics.
Frontiers in Neuroinformatics.
(2018). Unmasking unmasked: Neural dynamics following stroke.
Progress in Brain Research. 121, 203-218.
(1999).
(2008). Transformation of inputs in a model of the rat hippocampal CA1 network.
Society for Neuroscience 2010 (SFN '10).
(2010). Transformation of inputs in a model of the rat hippocampal CA1 network.
Computational Neuroscience Meeting (CNS 10').
(2010). Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex.
2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.
(2011). Tracking recurrence of correlation structure in neuronal recordings.
J Neurosci Methods. 275, 1-9.
(2017). Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.
Journal of Computational Surgery. 3, 12.
(2014). Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.
Pattern Recognit Lett. 36, 204–212.
(2014). Tonic-clonic transitions in computer simulation.
J Clin Neurophys. 24, 175-181.
(2007). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience 2014 (SFN '14).
(2014). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience Abstracts. 44,
(2014). Ten "not so simple" rules for credible practice of modeling & simulation in healthcare.
Frontiers in Medical Devices Meeting.
(2015). Synaptic information transfer in computer models of neocortical columns.
J Comput Neurosci. 30, 69-84.
(2011). Stochastic diffusion simulation in NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Standardized assessment of extracellular single unit isolation quality.
Society for Neuroscience.
(2008).
(2008). Spiking network modeling of neuronal dynamics in individual rats.
BMC Neuroscience.
(2015). Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex.
Neuroinformatics.
(2011).
(2018). Spectral method and high-order finite differences for the nonlinear cable equation.
Neural Comput. 22, 2113-2136.
(2010). Site-directed mRNA editing of sodium channels has potential to alter neuronal firing and network dynamics: Computer models.
Society for Neuroscience 2017 (SFN '17).
(2017). Simulations of synaptic potentials using realistic models of hippocampal pyramidal neurons.
163, 18.
(1991).
(1991).
(1991). Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(2008). Simulation of avalanches in mouse primary motor cortex (M1).
Computational Neuroscience Meeting (CNS 18').
(2018). Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON.
Neural Comput. 28, 2063-2090.
(2016). Simulating the spread of activation in neocortical circuits. Computational Neuroscience.
Computational Neuroscience.
(2011). Schizophrenia genome-wide association studied with computer simulation: gamma oscillations and information flow in CA3.
Society for Neuroscience 2016 (SFN '16).
(2016). A rule-based firing model for neural networks.
Int. J. for Bioelectromagnetism. 7, 47-50.
(2005). Rule-based firing for network simulations.
Neurocomputing. 69, 1160-1164.
(2006). Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex.
Society for Neuroscience.
(2011). Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm.
Front Neurosci. 10, 28.
(2016). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2016). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2014). Repairing Lesions via Kernel Adaptive Inverse Control in a Biomimetic Model of Sensorimotor Cortex.
Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. 1-4.
(2015). Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex.
PLoS One. 7, e47251.
(2012). Reinforcement learning of 2-joint virtual arm reaching in motor cortex simulation.
Computational Neuroscience Meeting (CNS '12).
(2012). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensory and motor cortex.
Society for Neuroscience 2012 (SFN '12).
(2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2013). Regulation of the NMDA component of EPSPs by different components of postsynaptic GABAergic inhibition: A computer simulation analysis in piriform cortex.
jnphys. 78, 2546-2559.
(1997). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior.
Society for Neuroscience 2010 (SFN '10).
(2010). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Receptive field formation and erasure in somatosensory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Receptive field changes following stroke-like cortical ablation: a role for activation dynamics.
jnphys. 78, 3438-3443.
(1997). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1992). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2012). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2013). Properties of a Hyperpolarization-Activated Cation Current in Interneurons in the Rat Lateral Geniculate Nucleus.
Neuroscience. 92, 445-457.
(1999). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(1999). Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure.
Journal of Neurophysiology. 94, 3925-3937.
(2005). Perisaccadic parietal and occipital gamma power in light and in complete darkness.
Perception. 37, 419-432.
(2008).
(1999). Paroxysm potentiation: synaptic potentiation enhances repetitive epileptiform discharge without enhancing evoked response.
Computation and neural systems meeting. Abstract,
(2004). Parallelizing large networks using NEURON-Python.
BMC Neuroscience.
(2015). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2017). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2006). Oscillations in Thalamic Interneurons.
snabs. 21, 12.5.
(1995). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1996). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2017). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015).