Lab Publications
Dynamical microstates in primary auditory cortex.
Society for Neuroscience Abstracts. 43,
(2013). Dynamically repairing and replacing neural networks: using hybrid computational and biological tools.
{IEEE} Pulse. 3, 57-59.
(2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.
IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
(2012). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease.
Front Comput Neurosci. 8, 39.
(2014). Embedded ensemble encoding hypothesis: The role of the ``Prepared'' cell.
J. Neurosci. Res..
(2018). Emergence of physiological oscillation frequencies in a computer model of neocortex.
Front Comput Neurosci. 5, 19.
(2011). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.
IBM Journal of Research and Development. 61, 6–1.
(2017). \gabaa-mediated IPSCs in piriform cortex have fast and slow components with different properties and locations on pyramidal cells: Study with physiological and modeling methods.
jnphys. 78, 2531-2545.
(1997). Hybrid neural networks - combining abstract and realistic neural units.
IEEE Engineering in Medicine and Biology Society Proceedings. 6, 3996-3998.
(2004). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.
PLoS One. 8, e76285.
(2013). Independent dendritic domains in the thalamic circuit.
Neurocomputing. 32, 299–305.
(2000). Independent variable timestep integration of individual neurons for network simulations.
17, 903-921.
(2005). Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment.
Neural Control of Movement (NCM) meeting.
(2014). Inhibition Can Disrupt Hypersynchrony In Model Neuronal Networks.
Progress in neuro-psychopharmacology & biological psychiatry.
(1997). Input-to-output transformation in a model of the rat hippocampal CA1 network.
Front Comput Neurosci. 6, 57.
(2012). Interictal EEG Discoordination in a Rat Seizure Model.
J Clin Neurophysiol. 27, 438–444.
(2010). An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus.
jnphys. 81, 702-711.
(1999). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(2008). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus.
J Neurosci. 31, 11733-11743.
(2011). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.
J Simulation. 11, 267.
(2017). Local axon collaterals of area ca1 support spread of epileptiform discharges within CA1, but propagation is unidirectional.
Hippocampus. 18, 1021-1033.
(2008).
(1989).
(2018). Measurement of peripheral vision reaction time identifies white matter disruption in patients with mild traumatic brain injury.
J Neurotrauma.
(2017). Measuring the quality of neuronal identification in ensemble recordings.
jnsci. 31, 16398–16409.
(2011). Modeling molecular pathways of neuronal ischemia.
Prog Mol Biol Transl Sci. 123, 249–275.
(2014). Modeling pathogenesis and treatment response in childhood absence epilepsy.
Epilepsia. 59, 135–145.
(2018). Modeling thalamocortical oscillations.
(Ulinski, P., Jones EG., & Peters A., Ed.).Cerebral Cortex. 13, 479-509.
(1999). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
BMC Neuroscience. 15, P106.
(2014). Motor cortex microcircuit simulation based on brain activity mapping.
Neural Comput. 26, 1239–1262.
(2014). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(2014). Multiscale modeling in the clinic: diseases of the brain and nervous system.
Brain Inform. 4, 219-230.
(2017). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2016). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). Muscarinic receptor mediated responses in thalamic local interneurons.
snabs. 22, 574.8.
(1996). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
BMC Neuroscience. 15, P107.
(2014). Neural query system: data-mining from within the NEURON simulator.
Neuroinformatics. 4, 163-176.
(2006). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2015). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2017). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1996). Oscillations in Thalamic Interneurons.
snabs. 21, 12.5.
(1995). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2006). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2017). Paroxysm potentiation: synaptic potentiation enhances repetitive epileptiform discharge without enhancing evoked response.
Computation and neural systems meeting. Abstract,
(2004).
(1999). Perisaccadic parietal and occipital gamma power in light and in complete darkness.
Perception. 37, 419-432.
(2008). Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure.
Journal of Neurophysiology. 94, 3925-3937.
(2005). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(1999). Properties of a Hyperpolarization-Activated Cation Current in Interneurons in the Rat Lateral Geniculate Nucleus.
Neuroscience. 92, 445-457.
(1999). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2013). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2012). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1992). Receptive field changes following stroke-like cortical ablation: a role for activation dynamics.
jnphys. 78, 3438-3443.
(1997). Regulation of the NMDA component of EPSPs by different components of postsynaptic GABAergic inhibition: A computer simulation analysis in piriform cortex.
jnphys. 78, 2546-2559.
(1997). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2013). Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex.
PLoS One. 7, e47251.
(2012). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2016). Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm.
Front Neurosci. 10, 28.
(2016). Rule-based firing for network simulations.
Neurocomputing. 69, 1160-1164.
(2006). A rule-based firing model for neural networks.
Int. J. for Bioelectromagnetism. 7, 47-50.
(2005). Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON.
Neural Comput. 28, 2063-2090.
(2016).
(1991).
(1991). Simulations of synaptic potentials using realistic models of hippocampal pyramidal neurons.
163, 18.
(1991). Spectral method and high-order finite differences for the nonlinear cable equation.
Neural Comput. 22, 2113-2136.
(2010).
(2018).
(2008). Synaptic information transfer in computer models of neocortical columns.
J Comput Neurosci. 30, 69-84.
(2011). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience Abstracts. 44,
(2014). Tonic-clonic transitions in computer simulation.
J Clin Neurophys. 24, 175-181.
(2007). Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.
Pattern Recognit Lett. 36, 204–212.
(2014). Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.
Journal of Computational Surgery. 3, 12.
(2014). Tracking recurrence of correlation structure in neuronal recordings.
J Neurosci Methods. 275, 1-9.
(2017). Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space.
jnsci. 28, 11250-11262.
(2008). Unmasking unmasked: Neural dynamics following stroke.
Progress in Brain Research. 121, 203-218.
(1999).